Variant report

Variant	rs7232445
Chromosome Location	chr18:40167288-40167289
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10460067	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11873683	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11878015	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11878107	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16976278	0.82[ASN][1000 genomes]
rs3924665	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3924666	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs57398776	0.82[ASN][1000 genomes]
rs6507484	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7232896	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs725743	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73470806	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7505905	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs8099032	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9304273	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9675799	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3447158	chr18:40045478-40320720	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:40164200-40167400	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr18:40164200-40167800	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr18:40164800-40167600	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr18:40166000-40167400	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr18:40166000-40167600	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr18:40166200-40167600	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr18:40166400-40167400	Enhancers	H9 Cell Line	embryonic stem cell
8	chr18:40166400-40167400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr18:40166600-40167400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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