Variant report

Variant	rs725743
Chromosome Location	chr18:40179929-40179930
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10460067	0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11873683	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11878015	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11878107	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3924665	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3924666	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs58180185	0.81[ASN][1000 genomes]
rs6507484	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7232445	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7232896	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73470806	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7505905	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8099032	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9304273	0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9675799	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3447158	chr18:40045478-40320720	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:40177400-40180000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr18:40179600-40186600	Weak transcription	Adipose Nuclei	Adipose

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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