Variant report

Variant	rs8099032
Chromosome Location	chr18:40160855-40160856
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10460067	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11082282	0.81[ASN][1000 genomes]
rs11082283	0.81[ASN][1000 genomes]
rs11873645	0.81[ASN][1000 genomes]
rs11873683	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11873684	0.81[ASN][1000 genomes]
rs11873748	0.81[ASN][1000 genomes]
rs11876814	0.81[ASN][1000 genomes]
rs11878015	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11878107	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16976278	0.83[ASN][1000 genomes]
rs3924665	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3924666	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4401125	0.81[ASN][1000 genomes]
rs4416104	0.81[ASN][1000 genomes]
rs4506996	0.81[ASN][1000 genomes]
rs56737646	0.81[ASN][1000 genomes]
rs56905850	0.81[ASN][1000 genomes]
rs57398776	0.83[ASN][1000 genomes]
rs57949888	0.81[ASN][1000 genomes]
rs59333900	0.81[ASN][1000 genomes]
rs6507484	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6507487	0.81[ASN][1000 genomes]
rs6507488	0.81[ASN][1000 genomes]
rs7228020	0.81[ASN][1000 genomes]
rs7228056	0.81[ASN][1000 genomes]
rs7229368	0.81[ASN][1000 genomes]
rs7232327	0.81[ASN][1000 genomes]
rs7232433	0.81[ASN][1000 genomes]
rs7232445	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7232896	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs725743	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73470806	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7505905	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8090489	0.81[ASN][1000 genomes]
rs8091693	0.81[ASN][1000 genomes]
rs9304273	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9675799	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3447158	chr18:40045478-40320720	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv2754458	chr18:40070202-40164902	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:40160600-40161200	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr18:40160800-40162400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr18:40160800-40163400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr18:40160800-40166400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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