Variant report

Variant	rs16976745
Chromosome Location	chr18:40324411-40324412
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10502801	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10502803	1.00[AMR][1000 genomes]
rs11873156	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11875369	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11876074	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16977057	1.00[AMR][1000 genomes]
rs16977072	1.00[AMR][1000 genomes]
rs2027747	1.00[AMR][1000 genomes]
rs4374259	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833632	chr18:40187679-40388058	Flanking Active TSS Weak transcription Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1056794	chr18:40197837-40688514	Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:40322800-40326800	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr18:40323000-40332400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr18:40323400-40324800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr18:40323600-40324600	Weak transcription	Liver	Liver
5	chr18:40323600-40326200	Enhancers	H1 Cell Line	embryonic stem cell
6	chr18:40323600-40328600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr18:40323800-40326400	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr18:40323800-40327000	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr18:40323800-40327000	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr18:40323800-40327200	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr18:40323800-40327200	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr18:40323800-40327200	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr18:40324000-40326000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr18:40324400-40327200	Enhancers	ES-I3 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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