Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10502800	1.00[YRI][hapmap]
rs10502801	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10502803	1.00[AMR][1000 genomes]
rs11874640	0.85[YRI][hapmap];0.82[AFR][1000 genomes]
rs11875369	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11876074	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11878096	0.85[YRI][hapmap]
rs16976745	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16976782	0.85[YRI][hapmap]
rs16976794	0.85[YRI][hapmap]
rs16976803	0.82[ASW][hapmap];1.00[LWK][hapmap];0.97[MKK][hapmap];1.00[YRI][hapmap]
rs16976882	0.85[YRI][hapmap]
rs16976923	0.84[ASW][hapmap];0.85[YRI][hapmap]
rs16976963	0.85[YRI][hapmap]
rs16976981	0.82[YRI][hapmap]
rs16977031	1.00[YRI][hapmap]
rs16977057	1.00[AMR][1000 genomes]
rs16977066	0.85[YRI][hapmap]
rs16977072	1.00[AMR][1000 genomes]
rs2027747	1.00[AMR][1000 genomes]
rs4374259	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60366603	0.82[AFR][1000 genomes]
rs7245114	0.85[YRI][hapmap]
rs73471610	0.82[AFR][1000 genomes]
rs73471640	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833632	chr18:40187679-40388058	Flanking Active TSS Weak transcription Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1056794	chr18:40197837-40688514	Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:40382600-40387600	Weak transcription	Fetal Lung	lung
2	chr18:40384200-40387400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr18:40384200-40387400	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr18:40384200-40387800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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