Variant report

Variant	rs11878096
Chromosome Location	chr18:40336792-40336793
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10502798	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10502799	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10502800	0.85[YRI][hapmap];0.83[AMR][1000 genomes]
rs10502801	0.88[YRI][hapmap]
rs11872412	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11873156	0.85[YRI][hapmap]
rs11874133	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11874179	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11874640	0.83[AMR][1000 genomes]
rs11874949	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11875369	0.88[YRI][hapmap]
rs11876074	0.88[YRI][hapmap]
rs16976782	1.00[CEU][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16976794	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs16976803	0.85[YRI][hapmap]
rs16976882	1.00[CEU][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16976923	1.00[CEU][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16976938	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16976940	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16976943	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16976963	1.00[CEU][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16977031	0.88[YRI][hapmap]
rs16977066	0.83[AMR][1000 genomes]
rs4374259	0.88[YRI][hapmap]
rs58072346	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58531497	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58657075	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59209619	0.83[AMR][1000 genomes]
rs60366603	0.83[AMR][1000 genomes]
rs60809285	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61360985	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7226846	1.00[EUR][1000 genomes]
rs7233111	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7233351	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7236730	1.00[CEU][hapmap];0.89[YRI][hapmap]
rs7245114	1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73471610	0.83[AMR][1000 genomes]
rs73471640	0.83[AMR][1000 genomes]
rs73486734	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73486739	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833632	chr18:40187679-40388058	Flanking Active TSS Weak transcription Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1056794	chr18:40197837-40688514	Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:40335400-40337800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr18:40335600-40336800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr18:40336400-40342800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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