Variant report

Variant	rs73486734
Chromosome Location	chr18:40389072-40389073
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10502798	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10502799	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10502800	0.83[AMR][1000 genomes]
rs11872412	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11874133	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11874179	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11874640	0.83[AMR][1000 genomes]
rs11874949	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11878096	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16976782	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16976882	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16976923	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16976938	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16976940	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16976943	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16976963	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16977066	0.83[AMR][1000 genomes]
rs58072346	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58531497	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58657075	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59209619	0.83[AMR][1000 genomes]
rs60366603	0.83[AMR][1000 genomes]
rs60809285	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61360985	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7226846	1.00[EUR][1000 genomes]
rs7233111	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7233351	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7245114	1.00[AMR][1000 genomes]
rs73471610	0.83[AMR][1000 genomes]
rs73471640	0.83[AMR][1000 genomes]
rs73486739	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1056794	chr18:40197837-40688514	Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv3337581	chr18:40387154-40390952	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
3	esv3426139	chr18:40389004-40391052	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:40387200-40389400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr18:40388000-40396800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr18:40388400-40389200	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr18:40388400-40389200	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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