Variant report

Variant	rs7226846
Chromosome Location	chr18:40363423-40363424
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10502798	1.00[EUR][1000 genomes]
rs10502799	1.00[EUR][1000 genomes]
rs11872412	1.00[EUR][1000 genomes]
rs11874133	1.00[EUR][1000 genomes]
rs11874179	1.00[EUR][1000 genomes]
rs11874949	1.00[EUR][1000 genomes]
rs11878096	1.00[EUR][1000 genomes]
rs16976782	1.00[EUR][1000 genomes]
rs16976882	1.00[EUR][1000 genomes]
rs16976923	1.00[EUR][1000 genomes]
rs16976938	1.00[EUR][1000 genomes]
rs16976940	1.00[EUR][1000 genomes]
rs16976943	1.00[EUR][1000 genomes]
rs16976963	1.00[EUR][1000 genomes]
rs58072346	1.00[EUR][1000 genomes]
rs58531497	1.00[EUR][1000 genomes]
rs58657075	1.00[EUR][1000 genomes]
rs60809285	1.00[EUR][1000 genomes]
rs61360985	1.00[EUR][1000 genomes]
rs7233111	1.00[EUR][1000 genomes]
rs7233351	1.00[EUR][1000 genomes]
rs73486734	1.00[EUR][1000 genomes]
rs73486739	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833632	chr18:40187679-40388058	Flanking Active TSS Weak transcription Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1056794	chr18:40197837-40688514	Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:40361400-40365800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr18:40361800-40365600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr18:40363000-40364200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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