Variant report

Variant	rs11874949
Chromosome Location	chr18:40384067-40384068
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10502798	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10502799	1.00[CEU][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10502800	0.83[AMR][1000 genomes]
rs11872412	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11874133	1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11874179	1.00[CEU][hapmap];0.94[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11874640	0.83[AMR][1000 genomes]
rs11878096	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16976782	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16976794	1.00[CEU][hapmap]
rs16976882	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16976923	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16976938	1.00[CEU][hapmap];0.91[LWK][hapmap];1.00[MKK][hapmap];0.89[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16976940	1.00[CEU][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16976943	1.00[CEU][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16976963	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16977066	0.83[AMR][1000 genomes]
rs58072346	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58531497	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58657075	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59209619	0.83[AMR][1000 genomes]
rs60366603	0.83[AMR][1000 genomes]
rs60809285	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61360985	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7226846	1.00[EUR][1000 genomes]
rs7233111	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7233351	1.00[CEU][hapmap];0.95[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7236730	1.00[CEU][hapmap]
rs7245114	1.00[CEU][hapmap];1.00[AMR][1000 genomes]
rs73471610	0.83[AMR][1000 genomes]
rs73471640	0.83[AMR][1000 genomes]
rs73486734	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73486739	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833632	chr18:40187679-40388058	Flanking Active TSS Weak transcription Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1056794	chr18:40197837-40688514	Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:40382000-40384600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr18:40382600-40387600	Weak transcription	Fetal Lung	lung
3	chr18:40383000-40384200	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr18:40383200-40384200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr18:40383200-40384200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr18:40383400-40384200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr18:40383400-40384200	Enhancers	Fetal Kidney	kidney

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