Variant report

Variant	rs59209619
Chromosome Location	chr18:40455710-40455711
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10502798	0.83[AMR][1000 genomes]
rs10502799	0.83[AMR][1000 genomes]
rs10502800	1.00[AMR][1000 genomes]
rs10502801	0.81[AFR][1000 genomes]
rs11872412	0.83[AMR][1000 genomes]
rs11874133	0.83[AMR][1000 genomes]
rs11874179	0.83[AMR][1000 genomes]
rs11874640	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11874949	0.83[AMR][1000 genomes]
rs11878096	0.83[AMR][1000 genomes]
rs16976782	0.83[AMR][1000 genomes]
rs16976882	0.83[AMR][1000 genomes]
rs16976923	0.83[AMR][1000 genomes]
rs16976938	0.83[AMR][1000 genomes]
rs16976940	0.83[AMR][1000 genomes]
rs16976943	0.83[AMR][1000 genomes]
rs16976963	0.83[AMR][1000 genomes]
rs16977066	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58072346	0.83[AMR][1000 genomes]
rs58531497	0.83[AMR][1000 genomes]
rs58657075	0.83[AMR][1000 genomes]
rs60366603	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60809285	0.83[AMR][1000 genomes]
rs61360985	0.83[AMR][1000 genomes]
rs7233111	0.83[AMR][1000 genomes]
rs7233351	0.83[AMR][1000 genomes]
rs7245114	0.83[AMR][1000 genomes]
rs73471610	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73471640	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73486734	0.83[AMR][1000 genomes]
rs73486739	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1056794	chr18:40197837-40688514	Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv2269	chr18:40430930-40475718	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv909574	chr18:40440609-40488279	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv909575	chr18:40440609-40493500	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:40445400-40468400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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