Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10502800	1.00[YRI][hapmap]
rs10502803	1.00[AMR][1000 genomes]
rs11873156	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11874640	0.88[YRI][hapmap]
rs11875369	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11876074	1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11878096	0.88[YRI][hapmap]
rs16976745	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16976782	0.88[YRI][hapmap]
rs16976794	0.85[YRI][hapmap]
rs16976803	1.00[YRI][hapmap]
rs16976882	0.88[YRI][hapmap]
rs16976923	0.85[YRI][hapmap]
rs16976963	0.88[YRI][hapmap]
rs16976981	0.87[YRI][hapmap]
rs16977031	1.00[YRI][hapmap]
rs16977057	1.00[AMR][1000 genomes]
rs16977066	0.85[YRI][hapmap]
rs16977072	1.00[AMR][1000 genomes]
rs2027747	1.00[AMR][1000 genomes]
rs4374259	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59209619	0.81[AFR][1000 genomes]
rs7245114	0.88[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1056794	chr18:40197837-40688514	Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:40396200-40397800	Enhancers	ES-I3 Cell Line	embryonic stem cell
2	chr18:40396200-40397800	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr18:40396200-40398000	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr18:40396200-40398200	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr18:40396200-40399800	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr18:40396200-40403000	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr18:40396400-40397600	Enhancers	H1 Cell Line	embryonic stem cell
8	chr18:40396400-40399000	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr18:40396400-40400400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr18:40396800-40397600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr18:40397000-40401400	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr18:40397400-40397800	Enhancers	ES-WA7 Cell Line	embryonic stem cell

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