Variant report

Variant	rs16977031
Chromosome Location	chr18:40412370-40412371
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10502798	0.83[AMR][1000 genomes]
rs10502799	0.83[AMR][1000 genomes]
rs10502800	1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10502801	1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs11872412	0.83[AMR][1000 genomes]
rs11873156	1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs11874133	0.83[AMR][1000 genomes]
rs11874179	0.83[AMR][1000 genomes]
rs11874640	0.88[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11874949	0.83[AMR][1000 genomes]
rs11875369	1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs11876074	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs11878096	0.88[YRI][hapmap];0.83[AMR][1000 genomes]
rs16976782	0.88[YRI][hapmap];0.83[AMR][1000 genomes]
rs16976794	0.85[YRI][hapmap]
rs16976803	1.00[YRI][hapmap]
rs16976882	0.88[YRI][hapmap];0.83[AMR][1000 genomes]
rs16976923	0.85[YRI][hapmap];0.83[AMR][1000 genomes]
rs16976938	0.83[AMR][1000 genomes]
rs16976940	0.83[AMR][1000 genomes]
rs16976943	0.83[AMR][1000 genomes]
rs16976963	0.88[YRI][hapmap];0.83[AMR][1000 genomes]
rs16976981	0.87[YRI][hapmap]
rs16977066	0.85[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4374259	1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs58072346	0.83[AMR][1000 genomes]
rs58531497	0.83[AMR][1000 genomes]
rs58657075	0.83[AMR][1000 genomes]
rs59209619	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60366603	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60809285	0.83[AMR][1000 genomes]
rs61360985	0.83[AMR][1000 genomes]
rs7233111	0.83[AMR][1000 genomes]
rs7233351	0.83[AMR][1000 genomes]
rs7245114	0.88[YRI][hapmap];0.83[AMR][1000 genomes]
rs73471610	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73471640	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73486734	0.83[AMR][1000 genomes]
rs73486739	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1056794	chr18:40197837-40688514	Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links