Variant report

Variant	rs16976981
Chromosome Location	chr18:40407139-40407140
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10502800	0.83[YRI][hapmap]
rs10502801	0.87[YRI][hapmap];1.00[AMR][1000 genomes]
rs10502803	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11873156	0.82[YRI][hapmap];1.00[AMR][1000 genomes]
rs11875369	0.87[YRI][hapmap];1.00[AMR][1000 genomes]
rs11876074	0.87[YRI][hapmap];1.00[AMR][1000 genomes]
rs16976745	1.00[AMR][1000 genomes]
rs16976803	0.82[YRI][hapmap]
rs16977031	0.87[YRI][hapmap]
rs16977057	1.00[AMR][1000 genomes]
rs16977072	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2027747	0.85[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4374259	0.87[YRI][hapmap];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1056794	chr18:40197837-40688514	Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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