Variant report

Variant	rs16978858
Chromosome Location	chr21:28082928-28082929
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs16997506	1.00[AMR][1000 genomes]
rs55634705	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56180176	1.00[AMR][1000 genomes]
rs57621755	1.00[AMR][1000 genomes]
rs59910146	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60337929	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61122426	1.00[AMR][1000 genomes]
rs61563936	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73898410	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73898416	1.00[AMR][1000 genomes]
rs73898417	1.00[AMR][1000 genomes]
rs73898428	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73898457	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73901604	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73901606	1.00[AMR][1000 genomes]
rs73901607	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8130719	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv459223	chr21:28070037-28092531	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv587337	chr21:28070037-28092531	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:28080000-28083600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr21:28080000-28083600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr21:28081800-28083000	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr21:28082000-28083000	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr21:28082200-28083000	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr21:28082200-28083200	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr21:28082200-28083400	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr21:28082400-28083400	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr21:28082600-28083000	Enhancers	Dnd41	blood
10	chr21:28082800-28083400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr21:28082800-28088400	Weak transcription	H9 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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