Variant report

Variant	rs73898410
Chromosome Location	chr21:28028615-28028616
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs16978858	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16997506	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17002229	1.00[AMR][1000 genomes]
rs55634705	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56180176	1.00[AMR][1000 genomes]
rs57621755	1.00[AMR][1000 genomes]
rs59910146	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60337929	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61122426	1.00[AMR][1000 genomes]
rs61563936	1.00[AMR][1000 genomes]
rs73898416	1.00[AMR][1000 genomes]
rs73898417	1.00[AMR][1000 genomes]
rs73898428	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73898457	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73901604	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73901606	1.00[AMR][1000 genomes]
rs73901607	1.00[AMR][1000 genomes]
rs8130719	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1056506	chr21:27332898-28049880	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv544412	chr21:27332898-28049880	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	nsv544413	chr21:27942060-28065995	Active TSS Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:28024600-28031600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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