Variant report

Variant	rs57621755
Chromosome Location	chr21:28089266-28089267
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs16978858	1.00[AMR][1000 genomes]
rs16997506	1.00[AMR][1000 genomes]
rs55634705	1.00[AMR][1000 genomes]
rs56180176	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59910146	1.00[AMR][1000 genomes]
rs60337929	1.00[AMR][1000 genomes]
rs61122426	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61563936	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73898410	1.00[AMR][1000 genomes]
rs73898416	1.00[AMR][1000 genomes]
rs73898417	1.00[AMR][1000 genomes]
rs73898428	1.00[AMR][1000 genomes]
rs73898457	1.00[AMR][1000 genomes]
rs73901604	1.00[AMR][1000 genomes]
rs73901606	1.00[AMR][1000 genomes]
rs73901607	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8130719	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv459223	chr21:28070037-28092531	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv587337	chr21:28070037-28092531	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:28088000-28090000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr21:28088200-28090000	Enhancers	Dnd41	blood
3	chr21:28088800-28089800	Weak transcription	Brain Anterior Caudate	brain
4	chr21:28088800-28091000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr21:28089200-28090000	Enhancers	Fetal Kidney	kidney

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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