Variant report

Variant	rs16986393
Chromosome Location	chrX:110413696-110413697
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10521531	1.00[GIH][hapmap];1.00[TSI][hapmap]
rs1361320	0.85[ASW][hapmap]
rs16986385	1.00[GIH][hapmap];1.00[TSI][hapmap]
rs2208017	1.00[GIH][hapmap]
rs2208018	1.00[GIH][hapmap];1.00[TSI][hapmap]
rs5943137	0.85[ASW][hapmap]
rs5985318	1.00[GIH][hapmap]
rs5985590	1.00[GIH][hapmap];1.00[TSI][hapmap]
rs6642860	1.00[GIH][hapmap]
rs7879757	1.00[GIH][hapmap]
rs9320060	1.00[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532899	chrX:110117241-110419226	Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv3337751	chrX:110217889-110429181	Enhancers Active TSS Bivalent Enhancer Strong transcription Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv869661	chrX:110337762-111084262	Enhancers Transcr. at gene 5' and 3' Weak transcription Genic enhancers Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:110351800-110419400	Weak transcription	Pancreas	Pancrea
2	chrX:110385200-110424200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chrX:110406600-110424800	Weak transcription	Brain Germinal Matrix	brain
4	chrX:110412600-110415600	Enhancers	Pancreatic Islets	Pancreatic Islet

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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