Variant report

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10521531	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap]
rs1159650	1.00[CEU][hapmap]
rs12116264	1.00[CEU][hapmap];0.95[YRI][hapmap]
rs1339302	1.00[CEU][hapmap]
rs1339303	1.00[CEU][hapmap]
rs1339304	1.00[CEU][hapmap]
rs1361320	1.00[CEU][hapmap]
rs16986368	1.00[CEU][hapmap]
rs16986378	1.00[CEU][hapmap]
rs16986384	1.00[CEU][hapmap];0.91[YRI][hapmap]
rs16986393	1.00[GIH][hapmap];1.00[TSI][hapmap]
rs1884552	1.00[CEU][hapmap];0.95[YRI][hapmap]
rs1884554	1.00[CEU][hapmap]
rs1884555	1.00[CEU][hapmap];0.95[YRI][hapmap]
rs2050750	1.00[CEU][hapmap]
rs2050751	1.00[CEU][hapmap]
rs2066102	1.00[CEU][hapmap]
rs2208017	1.00[CEU][hapmap];1.00[GIH][hapmap]
rs2208018	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs2208020	1.00[CEU][hapmap]
rs4341302	1.00[CEU][hapmap]
rs4384152	1.00[CEU][hapmap]
rs4514174	1.00[CEU][hapmap]
rs5942719	1.00[CEU][hapmap]
rs5942720	1.00[CEU][hapmap]
rs5942721	1.00[CEU][hapmap]
rs5943130	1.00[CEU][hapmap]
rs5943132	1.00[CEU][hapmap]
rs5943137	1.00[CEU][hapmap]
rs5985318	1.00[CEU][hapmap];1.00[GIH][hapmap]
rs5985586	1.00[CEU][hapmap]
rs5985587	1.00[CEU][hapmap]
rs5985588	1.00[CEU][hapmap]
rs5985590	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs6642857	1.00[CEU][hapmap]
rs6642860	1.00[CEU][hapmap];1.00[GIH][hapmap]
rs6642862	1.00[CEU][hapmap]
rs6642870	1.00[CEU][hapmap]
rs7879757	1.00[CEU][hapmap];1.00[GIH][hapmap]
rs7881798	1.00[CEU][hapmap]
rs9320060	1.00[GIH][hapmap]
rs994591	1.00[CEU][hapmap];1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532899	chrX:110117241-110419226	Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv3337751	chrX:110217889-110429181	Enhancers Active TSS Bivalent Enhancer Strong transcription Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv869661	chrX:110337762-111084262	Enhancers Transcr. at gene 5' and 3' Weak transcription Genic enhancers Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:110345600-110406200	Weak transcription	Brain Germinal Matrix	brain
2	chrX:110351800-110419400	Weak transcription	Pancreas	Pancrea
3	chrX:110383000-110398600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chrX:110385200-110424200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chrX:110395600-110395800	Enhancers	Pancreatic Islets	Pancreatic Islet

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