Variant report

Variant	rs5943137
Chromosome Location	chrX:110371452-110371453
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ALG13-7	chrX:110367493-110372431	NONHSAT138174

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10521531	1.00[CEU][hapmap]
rs1159650	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.90[YRI][hapmap]
rs12116264	1.00[CEU][hapmap]
rs1339302	1.00[CEU][hapmap];1.00[GIH][hapmap];0.83[TSI][hapmap]
rs1339303	1.00[CEU][hapmap];1.00[GIH][hapmap];0.83[TSI][hapmap]
rs1339304	1.00[CEU][hapmap]
rs1361320	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.83[TSI][hapmap];1.00[YRI][hapmap]
rs16986368	1.00[CEU][hapmap]
rs16986378	1.00[CEU][hapmap]
rs16986384	1.00[CEU][hapmap]
rs16986385	1.00[CEU][hapmap]
rs16986393	0.85[ASW][hapmap]
rs1884552	1.00[CEU][hapmap]
rs1884554	1.00[CEU][hapmap]
rs1884555	1.00[CEU][hapmap]
rs2050750	1.00[CEU][hapmap];1.00[MEX][hapmap];0.83[TSI][hapmap]
rs2050751	1.00[CEU][hapmap];1.00[GIH][hapmap]
rs2066102	1.00[CEU][hapmap]
rs2208017	1.00[CEU][hapmap];0.81[LWK][hapmap];1.00[TSI][hapmap]
rs2208018	1.00[CEU][hapmap];1.00[MEX][hapmap]
rs2208020	1.00[CEU][hapmap]
rs4341302	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.83[TSI][hapmap]
rs4384152	1.00[CEU][hapmap];1.00[MEX][hapmap]
rs4514174	1.00[CEU][hapmap]
rs5942719	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.83[TSI][hapmap]
rs5942720	1.00[CEU][hapmap]
rs5942721	1.00[CEU][hapmap]
rs5943130	1.00[CEU][hapmap]
rs5943132	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.83[TSI][hapmap]
rs5985318	1.00[CEU][hapmap];1.00[MEX][hapmap];0.83[TSI][hapmap]
rs5985586	1.00[CEU][hapmap];1.00[GIH][hapmap];0.83[TSI][hapmap]
rs5985587	1.00[CEU][hapmap]
rs5985588	1.00[CEU][hapmap];1.00[MEX][hapmap];0.83[TSI][hapmap]
rs5985590	1.00[CEU][hapmap]
rs6642857	1.00[CEU][hapmap];1.00[GIH][hapmap];0.83[TSI][hapmap]
rs6642860	1.00[CEU][hapmap];1.00[MEX][hapmap];0.83[TSI][hapmap]
rs6642862	1.00[CEU][hapmap];1.00[MEX][hapmap];0.83[TSI][hapmap]
rs6642870	1.00[CEU][hapmap]
rs7879757	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs7881798	1.00[CEU][hapmap]
rs994591	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532899	chrX:110117241-110419226	Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv3337751	chrX:110217889-110429181	Enhancers Active TSS Bivalent Enhancer Strong transcription Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv869661	chrX:110337762-111084262	Enhancers Transcr. at gene 5' and 3' Weak transcription Genic enhancers Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
4	nsv869737	chrX:110346973-110376790	Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:110340000-110374200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chrX:110345600-110406200	Weak transcription	Brain Germinal Matrix	brain
3	chrX:110347200-110372400	Weak transcription	Fetal Muscle Trunk	muscle
4	chrX:110349800-110375000	Weak transcription	Aorta	Aorta
5	chrX:110351800-110419400	Weak transcription	Pancreas	Pancrea
6	chrX:110366400-110374800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chrX:110370800-110376400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chrX:110371000-110374600	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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