Variant report
| Variant | rs6642870 |
|---|---|
| Chromosome Location | chrX:110375608-110375609 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chrX:110368396..110371071-chrX:110375207..110377505,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:40)
| rs_ID | r2[population] |
|---|---|
| rs10521531 | 1.00[CEU][hapmap] |
| rs1159650 | 1.00[CEU][hapmap] |
| rs12116264 | 1.00[CEU][hapmap] |
| rs1339302 | 1.00[CEU][hapmap] |
| rs1339303 | 1.00[CEU][hapmap] |
| rs1339304 | 1.00[CEU][hapmap] |
| rs1361320 | 1.00[CEU][hapmap] |
| rs16986368 | 1.00[CEU][hapmap] |
| rs16986378 | 1.00[CEU][hapmap] |
| rs16986384 | 1.00[CEU][hapmap] |
| rs16986385 | 1.00[CEU][hapmap] |
| rs1884552 | 1.00[CEU][hapmap] |
| rs1884554 | 1.00[CEU][hapmap] |
| rs1884555 | 1.00[CEU][hapmap] |
| rs2050750 | 1.00[CEU][hapmap] |
| rs2050751 | 1.00[CEU][hapmap] |
| rs2066102 | 1.00[CEU][hapmap] |
| rs2208017 | 1.00[CEU][hapmap] |
| rs2208018 | 1.00[CEU][hapmap] |
| rs2208020 | 1.00[CEU][hapmap] |
| rs4341302 | 1.00[CEU][hapmap] |
| rs4384152 | 1.00[CEU][hapmap] |
| rs4514174 | 1.00[CEU][hapmap] |
| rs5942719 | 1.00[CEU][hapmap] |
| rs5942720 | 1.00[CEU][hapmap] |
| rs5942721 | 1.00[CEU][hapmap] |
| rs5943130 | 1.00[CEU][hapmap] |
| rs5943132 | 1.00[CEU][hapmap] |
| rs5943137 | 1.00[CEU][hapmap] |
| rs5985318 | 1.00[CEU][hapmap] |
| rs5985586 | 1.00[CEU][hapmap] |
| rs5985587 | 1.00[CEU][hapmap] |
| rs5985588 | 1.00[CEU][hapmap] |
| rs5985590 | 1.00[CEU][hapmap] |
| rs6642857 | 1.00[CEU][hapmap] |
| rs6642860 | 1.00[CEU][hapmap] |
| rs6642862 | 1.00[CEU][hapmap] |
| rs7879757 | 1.00[CEU][hapmap] |
| rs7881798 | 1.00[CEU][hapmap] |
| rs994591 | 1.00[CEU][hapmap] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv532899 | chrX:110117241-110419226 | Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 2 | esv3337751 | chrX:110217889-110429181 | Enhancers Active TSS Bivalent Enhancer Strong transcription Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 3 | nsv869661 | chrX:110337762-111084262 | Enhancers Transcr. at gene 5' and 3' Weak transcription Genic enhancers Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 27 gene(s) | inside rSNPs | diseases |
| 4 | nsv869737 | chrX:110346973-110376790 | Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chrX:110345600-110406200 | Weak transcription | Brain Germinal Matrix | brain |
| 2 | chrX:110351800-110419400 | Weak transcription | Pancreas | Pancrea |
| 3 | chrX:110370800-110376400 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
| 4 | chrX:110374200-110375800 | Enhancers | hESC Derived CD56+ Mesoderm Cultured Cells | ES cell derived |
