Variant report

Variant	rs16987084
Chromosome Location	chr22:29499108-29499109
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr22:29473292..29476167-chr22:29497836..29499455,2	K562	blood:
2	chr22:29492716..29496133-chr22:29496800..29499655,3	K562	blood:
3	chr22:29497955..29499700-chr22:29664915..29667489,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000182944	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1022482	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10483154	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12628129	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12628787	0.85[CEU][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12628791	0.85[CEU][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16987014	1.00[CEU][hapmap];0.90[CHD][hapmap];0.90[JPT][hapmap];0.85[TSI][hapmap]
rs16987051	0.85[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16987052	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16987079	0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16987083	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28817997	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs35829194	1.00[EUR][1000 genomes]
rs5752869	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6519771	0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6519772	0.85[CEU][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7286554	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7286634	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7287223	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7289560	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs8135301	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8142545	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531586	chr22:29252132-29902266	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:29475600-29505600	Weak transcription	Spleen	Spleen
2	chr22:29483400-29550200	Weak transcription	Rectal Smooth Muscle	rectum
3	chr22:29486600-29519000	Weak transcription	Fetal Brain Male	brain
4	chr22:29488400-29521200	Weak transcription	Lung	lung
5	chr22:29489600-29499800	Strong transcription	Dnd41	blood
6	chr22:29490000-29501600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr22:29490000-29505200	Weak transcription	Aorta	Aorta
8	chr22:29490000-29514000	Weak transcription	Stomach Smooth Muscle	stomach
9	chr22:29490200-29502800	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr22:29490200-29503600	Weak transcription	HMEC	breast
11	chr22:29490400-29501400	Weak transcription	Colon Smooth Muscle	Colon
12	chr22:29490400-29508000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr22:29490400-29539800	Weak transcription	Psoas Muscle	Psoas
14	chr22:29491200-29521200	Weak transcription	Colonic Mucosa	Colon
15	chr22:29491600-29522200	Weak transcription	Liver	Liver
16	chr22:29491800-29503600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr22:29491800-29504400	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr22:29491800-29505400	Weak transcription	Duodenum Mucosa	Duodenum
19	chr22:29492000-29501000	Weak transcription	Primary neutrophils fromperipheralblood	blood
20	chr22:29492000-29503800	Weak transcription	NHDF-Ad	bronchial
21	chr22:29493200-29501400	Weak transcription	Ovary	ovary
22	chr22:29493200-29501600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr22:29493200-29503600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr22:29493200-29504200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr22:29493200-29504400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr22:29493200-29505400	Weak transcription	Right Ventricle	heart
27	chr22:29493200-29511600	Weak transcription	Gastric	stomach
28	chr22:29493200-29521000	Weak transcription	Skeletal Muscle Female	skeletal muscle
29	chr22:29493200-29521200	Weak transcription	Pancreas	Pancrea
30	chr22:29493200-29536400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
31	chr22:29493400-29499200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
32	chr22:29493400-29505400	Weak transcription	Small Intestine	intestine
33	chr22:29493400-29516400	Weak transcription	Skeletal Muscle Male	skeletal muscle
34	chr22:29493600-29502600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr22:29493800-29501200	Strong transcription	Fetal Intestine Small	intestine
36	chr22:29493800-29511600	Weak transcription	Fetal Heart	heart
37	chr22:29494200-29505400	Weak transcription	HepG2	liver
38	chr22:29494600-29506000	Weak transcription	Left Ventricle	heart
39	chr22:29494800-29499400	Strong transcription	Thymus	Thymus
40	chr22:29494800-29501200	Strong transcription	Fetal Muscle Leg	muscle
41	chr22:29495000-29499200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
42	chr22:29495000-29502600	Weak transcription	H1 Cell Line	embryonic stem cell
43	chr22:29495000-29504800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr22:29495000-29505600	Weak transcription	Right Atrium	heart
45	chr22:29495000-29509200	Weak transcription	Fetal Brain Female	brain
46	chr22:29495200-29499200	Weak transcription	HUES6 Cell Line	embryonic stem cell
47	chr22:29495200-29499400	Weak transcription	HUES64 Cell Line	embryonic stem cell
48	chr22:29495200-29503800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr22:29495200-29505400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr22:29495200-29505400	Weak transcription	Rectal Mucosa Donor 31	rectum

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