Variant report

Variant	rs28817997
Chromosome Location	chr22:29464298-29464299
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1022482	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10483154	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12160337	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12628129	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs16987014	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs16987051	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16987052	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16987084	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs35829194	0.82[EUR][1000 genomes]
rs5752869	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7286554	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7286634	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7287223	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7289560	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8142545	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531586	chr22:29252132-29902266	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:29451800-29465200	Weak transcription	Fetal Intestine Small	intestine
2	chr22:29451800-29467000	Weak transcription	Ovary	ovary
3	chr22:29455800-29465600	Weak transcription	K562	blood
4	chr22:29458600-29466600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr22:29459000-29465400	Weak transcription	Psoas Muscle	Psoas
6	chr22:29462200-29467800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr22:29462400-29465000	Weak transcription	HepG2	liver
8	chr22:29462400-29465800	Weak transcription	Thymus	Thymus
9	chr22:29462400-29467800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
10	chr22:29462400-29467800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr22:29462600-29465000	Weak transcription	Fetal Thymus	thymus
12	chr22:29463800-29465000	Weak transcription	Fetal Muscle Trunk	muscle
13	chr22:29463800-29468400	Weak transcription	Dnd41	blood
14	chr22:29464000-29465000	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr22:29464000-29465000	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr22:29464200-29465400	Enhancers	Fetal Muscle Leg	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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