Variant report

Variant	rs16987335
Chromosome Location	chr20:41382563-41382564
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11908546	1.00[MEX][hapmap]
rs57758310	0.87[ASN][1000 genomes]
rs58340192	0.86[ASN][1000 genomes]
rs6016925	1.00[MEX][hapmap]
rs6103027	1.00[CHB][hapmap]
rs6103088	1.00[CHB][hapmap]
rs7268336	1.00[MEX][hapmap]
rs73907262	1.00[ASN][1000 genomes]
rs8122735	1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915994	chr20:41180550-41464507	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1058990	chr20:41289969-41543912	Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv544277	chr20:41289969-41543912	Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:41378800-41385800	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr20:41379400-41383600	Weak transcription	Lung	lung
3	chr20:41380400-41384400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr20:41381800-41383800	Weak transcription	Stomach Mucosa	stomach
5	chr20:41382000-41383600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr20:41382400-41387800	Enhancers	Adipose Nuclei	Adipose

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links