Variant report

Variant	rs6103027
Chromosome Location	chr20:41369449-41369450
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs16987335	1.00[CHB][hapmap]
rs6103022	1.00[JPT][hapmap]
rs6103088	1.00[CHB][hapmap]
rs8119626	0.80[AMR][1000 genomes]
rs8122735	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064253	chr20:41120425-41379706	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Active TSS	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv915994	chr20:41180550-41464507	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv833988	chr20:41227788-41379921	Strong transcription Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1058990	chr20:41289969-41543912	Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv544277	chr20:41289969-41543912	Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv586028	chr20:41296994-41381215	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:41360600-41370200	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr20:41367400-41369800	Enhancers	Fetal Brain Female	brain
3	chr20:41368000-41370400	Enhancers	Fetal Brain Male	brain
4	chr20:41368400-41369600	Enhancers	Fetal Muscle Leg	muscle
5	chr20:41368400-41369800	Enhancers	Adipose Nuclei	Adipose
6	chr20:41368400-41370000	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr20:41368600-41369800	Enhancers	Colon Smooth Muscle	Colon
8	chr20:41368600-41370000	Enhancers	Brain Germinal Matrix	brain
9	chr20:41368800-41369600	Enhancers	Brain Inferior Temporal Lobe	brain
10	chr20:41368800-41369800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr20:41369200-41369600	Enhancers	Brain Anterior Caudate	brain
12	chr20:41369200-41369600	Enhancers	Brain Hippocampus Middle	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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