Variant report

Variant	rs16988872
Chromosome Location	chr19:51580161-51580162
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10445581	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs10500304	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs16988866	1.00[CEU][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17658926	0.87[CEU][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs1880416	0.85[ASN][1000 genomes]
rs2569488	0.81[ASN][1000 genomes]
rs2569489	1.00[JPT][hapmap]
rs2569491	1.00[JPT][hapmap]
rs66613646	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7351079	1.00[JPT][hapmap]
rs867192	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs9304708	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34104	chr19:51566170-51641675	Enhancers Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:51574200-51582600	Weak transcription	Pancreas	Pancrea
2	chr19:51579000-51580400	Enhancers	NHEK	skin
3	chr19:51579200-51580200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr19:51579600-51580200	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr19:51579600-51580600	Enhancers	H1 Cell Line	embryonic stem cell
6	chr19:51579600-51580600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr19:51579800-51580200	Enhancers	H9 Cell Line	embryonic stem cell
8	chr19:51579800-51580200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr19:51579800-51580600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr19:51580000-51580400	Enhancers	Esophagus	oesophagus
11	chr19:51580000-51582800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr19:51580000-51587800	Weak transcription	Right Atrium	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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