Variant report

Variant	rs16995845
Chromosome Location	chr20:15488238-15488239
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1420443	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs16995808	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs16995949	1.00[CEU][hapmap]
rs16995961	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs2327954	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62193892	0.83[EUR][1000 genomes]
rs62193894	0.97[EUR][1000 genomes]
rs62193895	0.97[EUR][1000 genomes]
rs62193935	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62193937	1.00[EUR][1000 genomes]
rs62195568	0.94[EUR][1000 genomes]
rs73254709	0.97[EUR][1000 genomes]
rs8116068	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs8121515	1.00[CEU][hapmap];0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062252	chr20:14964258-15547739	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv544206	chr20:14964258-15547739	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv869328	chr20:15325423-16213898	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv833927	chr20:15362602-15520185	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:15486000-15488600	Enhancers	Fetal Brain Male	brain
2	chr20:15487600-15488800	Enhancers	Brain Hippocampus Middle	brain
3	chr20:15487600-15489200	Weak transcription	Stomach Smooth Muscle	stomach
4	chr20:15488200-15488400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr20:15488200-15488800	Enhancers	Brain Cingulate Gyrus	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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