Variant report
| Variant | rs16995949 |
|---|---|
| Chromosome Location | chr20:15528425-15528426 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs1233759 | 1.00[YRI][hapmap] |
| rs1233760 | 1.00[YRI][hapmap] |
| rs1233762 | 1.00[YRI][hapmap] |
| rs1233769 | 1.00[YRI][hapmap] |
| rs1233771 | 1.00[YRI][hapmap] |
| rs1233779 | 1.00[JPT][hapmap] |
| rs16995808 | 1.00[CEU][hapmap];0.94[EUR][1000 genomes] |
| rs16995845 | 1.00[CEU][hapmap];0.94[EUR][1000 genomes] |
| rs16995929 | 1.00[JPT][hapmap];1.00[YRI][hapmap] |
| rs16995961 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2224301 | 1.00[YRI][hapmap] |
| rs2327954 | 0.94[EUR][1000 genomes] |
| rs62193894 | 0.91[EUR][1000 genomes] |
| rs62193895 | 0.91[EUR][1000 genomes] |
| rs62193935 | 0.94[EUR][1000 genomes] |
| rs62193937 | 0.94[EUR][1000 genomes] |
| rs62195568 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs73254709 | 0.91[EUR][1000 genomes] |
| rs8119587 | 1.00[YRI][hapmap] |
| rs8121515 | 1.00[CEU][hapmap] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1062252 | chr20:14964258-15547739 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 2 | nsv544206 | chr20:14964258-15547739 | Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 3 | nsv869328 | chr20:15325423-16213898 | Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| 4 | esv2751909 | chr20:15489871-15656007 | Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats | TF binding regionChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
