Variant report

Variant	rs16995996
Chromosome Location	chr20:15543234-15543235
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs6105431	0.86[EUR][1000 genomes]
rs7266469	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062252	chr20:14964258-15547739	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv544206	chr20:14964258-15547739	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv869328	chr20:15325423-16213898	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	esv2751909	chr20:15489871-15656007	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:15541000-15543800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr20:15541200-15545000	Enhancers	Fetal Stomach	stomach
3	chr20:15541400-15543400	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr20:15541400-15543600	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr20:15541400-15543800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr20:15541600-15543400	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr20:15541600-15543400	Enhancers	Brain Angular Gyrus	brain
8	chr20:15541600-15543600	Enhancers	H1 Cell Line	embryonic stem cell
9	chr20:15541600-15543600	Enhancers	Brain Cingulate Gyrus	brain
10	chr20:15541600-15543800	Enhancers	Brain Inferior Temporal Lobe	brain
11	chr20:15541600-15544000	Enhancers	H9 Cell Line	embryonic stem cell
12	chr20:15541600-15544800	Enhancers	Brain Substantia Nigra	brain
13	chr20:15541800-15543400	Enhancers	Brain Germinal Matrix	brain
14	chr20:15541800-15543800	Enhancers	Colon Smooth Muscle	Colon
15	chr20:15542000-15545200	Weak transcription	Fetal Lung	lung
16	chr20:15542200-15543400	Weak transcription	Rectal Smooth Muscle	rectum
17	chr20:15542600-15554000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr20:15542800-15543600	Enhancers	iPS-18 Cell Line	embryonic stem cell
19	chr20:15542800-15544200	Enhancers	Brain Hippocampus Middle	brain
20	chr20:15542800-15544800	Weak transcription	Fetal Brain Male	brain
21	chr20:15543000-15543400	Enhancers	Brain Anterior Caudate	brain
22	chr20:15543000-15543600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr20:15543000-15545000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr20:15543000-15562200	Weak transcription	Stomach Smooth Muscle	stomach
25	chr20:15543200-15543800	Enhancers	iPS-20b Cell Line	embryonic stem cell

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