Variant report
Variant | rs7266469 |
---|---|
Chromosome Location | chr20:15524015-15524016 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs11906249 | 1.00[CHB][hapmap] |
rs1233759 | 1.00[CHB][hapmap] |
rs1233760 | 1.00[CHB][hapmap] |
rs1233761 | 1.00[CHB][hapmap] |
rs1233762 | 1.00[CHB][hapmap] |
rs1233763 | 1.00[CHB][hapmap] |
rs1233764 | 1.00[CHB][hapmap] |
rs1233766 | 1.00[CHB][hapmap] |
rs1233769 | 1.00[CHB][hapmap] |
rs1233771 | 1.00[CHB][hapmap] |
rs1233772 | 1.00[CEU][hapmap];1.00[CHB][hapmap] |
rs1558739 | 1.00[CHB][hapmap] |
rs16995929 | 0.82[CEU][hapmap];0.93[MKK][hapmap] |
rs16995996 | 0.86[EUR][1000 genomes] |
rs2145017 | 1.00[CHB][hapmap] |
rs2208136 | 1.00[CHB][hapmap] |
rs2224301 | 1.00[CHB][hapmap] |
rs4814389 | 1.00[ASW][hapmap] |
rs56249914 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs6105431 | 1.00[CEU][hapmap];1.00[EUR][1000 genomes] |
rs7264339 | 1.00[MEX][hapmap] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1062252 | chr20:14964258-15547739 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
2 | nsv544206 | chr20:14964258-15547739 | Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
3 | nsv869328 | chr20:15325423-16213898 | Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
4 | esv2751909 | chr20:15489871-15656007 | Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats | TF binding regionChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
5 | nsv1057672 | chr20:15512342-15527164 | Enhancers Weak transcription | n/a | n/a | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr20:15522400-15524800 | Weak transcription | Gastric | stomach |