Variant report

Variant	rs16996348
Chromosome Location	chr21:39827226-39827227
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr21:39825863..39829092-chr21:39829816..39833688,5	MCF-7	breast:
2	chr21:39825415..39827959-chr21:39832760..39834789,2	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11908941	1.00[EUR][1000 genomes]
rs11909765	1.00[EUR][1000 genomes]
rs2836539	1.00[EUR][1000 genomes]
rs2836540	1.00[EUR][1000 genomes]
rs73429417	1.00[EUR][1000 genomes]
rs73429432	1.00[EUR][1000 genomes]
rs73440129	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834098	chr21:39691898-39845254	Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv1059340	chr21:39817504-39881353	Weak transcription Enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:39811200-39847400	Weak transcription	Right Ventricle	heart
2	chr21:39812800-39844600	Weak transcription	Fetal Muscle Trunk	muscle
3	chr21:39813200-39833400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr21:39821000-39829600	Weak transcription	Esophagus	oesophagus
5	chr21:39821000-39829600	Weak transcription	Left Ventricle	heart
6	chr21:39821000-39829600	Weak transcription	Lung	lung
7	chr21:39821000-39830800	Weak transcription	Aorta	Aorta
8	chr21:39821000-39830800	Weak transcription	Right Atrium	heart
9	chr21:39821000-39832000	Weak transcription	Spleen	Spleen
10	chr21:39821200-39829600	Weak transcription	Primary neutrophils fromperipheralblood	blood
11	chr21:39821200-39836400	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr21:39821400-39829600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr21:39823200-39830600	Weak transcription	Primary hematopoietic stem cells	blood
14	chr21:39824600-39829600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
15	chr21:39825600-39829800	Weak transcription	Adipose Nuclei	Adipose
16	chr21:39826200-39831200	Genic enhancers	HUVEC	blood vessel
17	chr21:39826400-39828800	Enhancers	Breast Myoepithelial Primary Cells	Breast
18	chr21:39826600-39828000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr21:39826600-39828000	Enhancers	Osteobl	bone
20	chr21:39826800-39833200	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr21:39827200-39827400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr21:39827200-39827800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr21:39827200-39827800	Enhancers	Fetal Muscle Leg	muscle
24	chr21:39827200-39827800	Enhancers	HSMMtube	muscle
25	chr21:39827200-39828000	Enhancers	NH-A	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links