Variant report

Variant	rs73429432
Chromosome Location	chr21:39939969-39939970
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr21:39927283..39929950-chr21:39938124..39940095,2	MCF-7	breast:
2	chr21:39932487..39936262-chr21:39938528..39942043,3	MCF-7	breast:
3	chr21:39938475..39940465-chr21:39941181..39943748,2	MCF-7	breast:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11908941	1.00[EUR][1000 genomes]
rs11909765	1.00[EUR][1000 genomes]
rs16996348	1.00[EUR][1000 genomes]
rs16996780	1.00[EUR][1000 genomes]
rs2836539	1.00[EUR][1000 genomes]
rs2836540	1.00[EUR][1000 genomes]
rs55662961	1.00[EUR][1000 genomes]
rs55926618	1.00[EUR][1000 genomes]
rs73429417	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73440129	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2751930	chr21:39917180-39956061	Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:39929000-39946800	Weak transcription	Aorta	Aorta
2	chr21:39932200-39940600	Weak transcription	Gastric	stomach
3	chr21:39938600-39940000	Enhancers	H1 Cell Line	embryonic stem cell
4	chr21:39938600-39940000	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr21:39938600-39940000	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr21:39938800-39940000	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
7	chr21:39938800-39940200	Bivalent/Poised TSS	NHDF-Ad	bronchial
8	chr21:39939000-39940000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr21:39939000-39940000	Bivalent/Poised TSS	Brain Hippocampus Middle	brain
10	chr21:39939000-39940000	Bivalent/Poised TSS	HSMM	muscle
11	chr21:39939000-39940000	Bivalent/Poised TSS	HSMMtube	muscle
12	chr21:39939200-39940000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr21:39939200-39940000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr21:39939200-39940000	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr21:39939200-39940000	Bivalent/Poised TSS	Brain Substantia Nigra	brain
16	chr21:39939200-39940000	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
17	chr21:39939200-39940000	Enhancers	Psoas Muscle	Psoas
18	chr21:39939400-39940000	Bivalent/Poised TSS	Brain Angular Gyrus	brain
19	chr21:39939400-39940000	Bivalent/Poised TSS	Brain Inferior Temporal Lobe	brain
20	chr21:39939400-39940000	Flanking Bivalent TSS/Enh	Fetal Lung	lung
21	chr21:39939400-39940000	Flanking Active TSS	Fetal Muscle Leg	muscle
22	chr21:39939400-39940000	Active TSS	Fetal Stomach	stomach
23	chr21:39939400-39940000	Active TSS	Ovary	ovary
24	chr21:39939400-39940000	Flanking Active TSS	NH-A	brain
25	chr21:39939400-39940000	Bivalent/Poised TSS	NHLF	lung
26	chr21:39939400-39940000	Flanking Bivalent TSS/Enh	Osteobl	bone
27	chr21:39939600-39940000	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
28	chr21:39939600-39940000	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr21:39939600-39940000	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr21:39939600-39940000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr21:39939600-39940000	Active TSS	Brain Anterior Caudate	brain
32	chr21:39939600-39940000	Bivalent/Poised TSS	Brain Cingulate Gyrus	brain
33	chr21:39939600-39940000	Flanking Active TSS	Fetal Muscle Trunk	muscle
34	chr21:39939600-39940400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr21:39939800-39940000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr21:39939800-39940000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr21:39939800-39940000	Bivalent Enhancer	Muscle Satellite Cultured Cells	--
38	chr21:39939800-39940000	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
39	chr21:39939800-39940000	Bivalent/Poised TSS	Skeletal Muscle Male	skeletal muscle
40	chr21:39939800-39940200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr21:39939800-39940400	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr21:39939800-39940600	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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