Variant report

Variant	rs73429417
Chromosome Location	chr21:39933217-39933218
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11908941	1.00[EUR][1000 genomes]
rs11909765	1.00[EUR][1000 genomes]
rs16996348	1.00[EUR][1000 genomes]
rs2836539	1.00[EUR][1000 genomes]
rs2836540	1.00[EUR][1000 genomes]
rs73429432	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73440129	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2751930	chr21:39917180-39956061	Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv3516	chr21:39928540-39936213	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:39911200-39935200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr21:39929000-39946800	Weak transcription	Aorta	Aorta
3	chr21:39932200-39940600	Weak transcription	Gastric	stomach
4	chr21:39932400-39938800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr21:39932800-39933800	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr21:39932800-39935200	Enhancers	HepG2	liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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