Variant report

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs16998758	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16998890	1.00[EUR][1000 genomes]
rs2032286	1.00[EUR][1000 genomes]
rs2155622	1.00[EUR][1000 genomes]
rs2155623	0.90[AMR][1000 genomes]
rs2186870	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2404135	1.00[EUR][1000 genomes]
rs2823840	1.00[EUR][1000 genomes]
rs2823841	1.00[EUR][1000 genomes]
rs2823850	1.00[EUR][1000 genomes]
rs2823851	1.00[EUR][1000 genomes]
rs2823857	1.00[EUR][1000 genomes]
rs2823858	1.00[EUR][1000 genomes]
rs2823859	1.00[EUR][1000 genomes]
rs2823861	1.00[EUR][1000 genomes]
rs28622187	1.00[EUR][1000 genomes]
rs57039340	1.00[EUR][1000 genomes]
rs58981188	1.00[EUR][1000 genomes]
rs59527462	1.00[EUR][1000 genomes]
rs7279732	1.00[EUR][1000 genomes]
rs73367434	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73367453	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73367470	1.00[EUR][1000 genomes]
rs73367472	1.00[EUR][1000 genomes]
rs73367500	1.00[EUR][1000 genomes]
rs8129300	1.00[EUR][1000 genomes]
rs8129839	1.00[EUR][1000 genomes]
rs8133774	1.00[EUR][1000 genomes]
rs8134294	1.00[EUR][1000 genomes]
rs8134648	1.00[EUR][1000 genomes]
rs9979076	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064857	chr21:17628760-18533131	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	345 gene(s)	inside rSNPs	diseases
2	nsv544382	chr21:17628760-18533131	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	345 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:17841000-17881800	Weak transcription	Hela-S3	cervix
2	chr21:17865000-17875600	Weak transcription	Psoas Muscle	Psoas
3	chr21:17866800-17878200	Weak transcription	Ovary	ovary
4	chr21:17872200-17873400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr21:17873000-17877200	Weak transcription	Brain Anterior Caudate	brain
6	chr21:17873000-17883800	Weak transcription	Fetal Brain Female	brain
7	chr21:17873200-17877600	Weak transcription	Brain Substantia Nigra	brain
8	chr21:17873200-17886400	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr21:17873200-17886400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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