Variant report

Variant	rs2404135
Chromosome Location	chr21:17883439-17883440
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs12483106	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16998685	1.00[EUR][1000 genomes]
rs16998758	1.00[EUR][1000 genomes]
rs16998890	1.00[EUR][1000 genomes]
rs2032286	1.00[EUR][1000 genomes]
rs2155622	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2186870	1.00[EUR][1000 genomes]
rs2823840	1.00[EUR][1000 genomes]
rs2823841	1.00[EUR][1000 genomes]
rs2823848	1.00[ASN][1000 genomes]
rs2823850	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2823851	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2823857	1.00[EUR][1000 genomes]
rs2823858	1.00[EUR][1000 genomes]
rs2823859	1.00[EUR][1000 genomes]
rs2823861	1.00[EUR][1000 genomes]
rs2823863	0.97[ASN][1000 genomes]
rs28622187	1.00[EUR][1000 genomes]
rs28647658	0.95[ASN][1000 genomes]
rs57039340	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58981188	1.00[EUR][1000 genomes]
rs59527462	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7279732	1.00[EUR][1000 genomes]
rs7282899	0.81[ASN][1000 genomes]
rs73367434	1.00[EUR][1000 genomes]
rs73367453	1.00[EUR][1000 genomes]
rs73367470	1.00[EUR][1000 genomes]
rs73367472	1.00[EUR][1000 genomes]
rs73367500	1.00[EUR][1000 genomes]
rs8129300	1.00[EUR][1000 genomes]
rs8129839	1.00[EUR][1000 genomes]
rs8133774	1.00[EUR][1000 genomes]
rs8134294	1.00[EUR][1000 genomes]
rs8134648	1.00[EUR][1000 genomes]
rs9975284	0.80[ASN][1000 genomes]
rs9976995	1.00[ASN][1000 genomes]
rs9977870	1.00[ASN][1000 genomes]
rs9979076	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9979111	1.00[ASN][1000 genomes]
rs9982229	0.95[ASN][1000 genomes]
rs9984951	0.80[ASN][1000 genomes]
rs9984970	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064857	chr21:17628760-18533131	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	345 gene(s)	inside rSNPs	diseases
2	nsv544382	chr21:17628760-18533131	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	345 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:17873000-17883800	Weak transcription	Fetal Brain Female	brain
2	chr21:17873200-17886400	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr21:17873200-17886400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr21:17877600-17889600	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr21:17878800-17889400	Weak transcription	Ovary	ovary
6	chr21:17879000-17891400	Weak transcription	Fetal Brain Male	brain
7	chr21:17882400-17884800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr21:17882600-17883600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr21:17882600-17894600	Weak transcription	Hela-S3	cervix
10	chr21:17882800-17890000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr21:17883200-17884800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links