Variant report

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs16998685	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16998758	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16998890	1.00[EUR][1000 genomes]
rs2032286	1.00[EUR][1000 genomes]
rs2155622	1.00[EUR][1000 genomes]
rs2155623	1.00[AMR][1000 genomes]
rs2186870	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2404135	1.00[EUR][1000 genomes]
rs2823840	1.00[EUR][1000 genomes]
rs2823841	1.00[EUR][1000 genomes]
rs2823850	1.00[EUR][1000 genomes]
rs2823851	1.00[EUR][1000 genomes]
rs2823857	1.00[EUR][1000 genomes]
rs2823858	1.00[EUR][1000 genomes]
rs2823859	1.00[EUR][1000 genomes]
rs2823861	1.00[EUR][1000 genomes]
rs28622187	1.00[EUR][1000 genomes]
rs57039340	1.00[EUR][1000 genomes]
rs58981188	1.00[EUR][1000 genomes]
rs59527462	1.00[EUR][1000 genomes]
rs7279732	1.00[EUR][1000 genomes]
rs73367434	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73367470	1.00[EUR][1000 genomes]
rs73367472	1.00[EUR][1000 genomes]
rs73367500	1.00[EUR][1000 genomes]
rs8127360	0.90[AMR][1000 genomes]
rs8129300	1.00[EUR][1000 genomes]
rs8129839	1.00[EUR][1000 genomes]
rs8132247	0.90[AMR][1000 genomes]
rs8133774	1.00[EUR][1000 genomes]
rs8134294	1.00[EUR][1000 genomes]
rs8134648	1.00[EUR][1000 genomes]
rs9979076	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064857	chr21:17628760-18533131	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	345 gene(s)	inside rSNPs	diseases
2	nsv544382	chr21:17628760-18533131	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	345 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:17873200-17886400	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr21:17873200-17886400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr21:17877600-17889600	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr21:17878800-17889400	Weak transcription	Ovary	ovary
5	chr21:17879000-17891400	Weak transcription	Fetal Brain Male	brain
6	chr21:17882600-17894600	Weak transcription	Hela-S3	cervix
7	chr21:17882800-17890000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr21:17884800-17885600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr21:17885400-17885600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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