Variant report

Variant	rs9979111
Chromosome Location	chr21:17869102-17869103
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs12483106	1.00[ASN][1000 genomes]
rs2404135	1.00[ASN][1000 genomes]
rs2823848	1.00[ASN][1000 genomes]
rs2823850	1.00[ASN][1000 genomes]
rs2823851	1.00[ASN][1000 genomes]
rs2823863	0.97[ASN][1000 genomes]
rs28647658	0.95[ASN][1000 genomes]
rs59527462	1.00[ASN][1000 genomes]
rs7282899	0.81[ASN][1000 genomes]
rs9975284	0.80[ASN][1000 genomes]
rs9976995	1.00[ASN][1000 genomes]
rs9977870	1.00[ASN][1000 genomes]
rs9979076	1.00[ASN][1000 genomes]
rs9982229	0.95[ASN][1000 genomes]
rs9984951	0.80[ASN][1000 genomes]
rs9984970	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064857	chr21:17628760-18533131	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	345 gene(s)	inside rSNPs	diseases
2	nsv544382	chr21:17628760-18533131	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	345 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:17841000-17881800	Weak transcription	Hela-S3	cervix
2	chr21:17860600-17871600	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr21:17860800-17872800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr21:17861600-17872200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr21:17865000-17875600	Weak transcription	Psoas Muscle	Psoas
6	chr21:17865400-17872600	Weak transcription	Brain Anterior Caudate	brain
7	chr21:17866800-17878200	Weak transcription	Ovary	ovary
8	chr21:17868400-17869600	Enhancers	HUVEC	blood vessel
9	chr21:17869000-17869400	Enhancers	Muscle Satellite Cultured Cells	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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