Variant report

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs12483106	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2404135	1.00[ASN][1000 genomes]
rs2823823	1.00[EUR][1000 genomes]
rs2823824	0.86[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs2823850	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2823851	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2823863	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs2823867	0.86[CHB][hapmap]
rs2823871	0.86[CHB][hapmap]
rs2823876	0.86[CHB][hapmap]
rs2823877	0.85[CHB][hapmap]
rs2823880	0.86[CHB][hapmap]
rs28622187	0.83[AMR][1000 genomes]
rs28647658	0.95[ASN][1000 genomes]
rs58611293	1.00[EUR][1000 genomes]
rs59527462	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7282899	0.86[CHB][hapmap];0.81[ASN][1000 genomes]
rs73367470	0.83[AMR][1000 genomes]
rs8126961	1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs8129839	0.83[AMR][1000 genomes]
rs8131578	0.86[CHB][hapmap]
rs8131711	1.00[EUR][1000 genomes]
rs8131829	1.00[EUR][1000 genomes]
rs8134246	0.85[CHB][hapmap]
rs9305769	1.00[JPT][hapmap]
rs9975284	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs9976995	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9977870	1.00[ASN][1000 genomes]
rs9979076	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9979111	1.00[ASN][1000 genomes]
rs9982229	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs9984951	0.86[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs9984970	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064857	chr21:17628760-18533131	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	345 gene(s)	inside rSNPs	diseases
2	nsv544382	chr21:17628760-18533131	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	345 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:17841000-17881800	Weak transcription	Hela-S3	cervix
2	chr21:17866800-17878200	Weak transcription	Ovary	ovary
3	chr21:17873000-17877200	Weak transcription	Brain Anterior Caudate	brain
4	chr21:17873000-17883800	Weak transcription	Fetal Brain Female	brain
5	chr21:17873200-17877600	Weak transcription	Brain Substantia Nigra	brain
6	chr21:17873200-17886400	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr21:17873200-17886400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr21:17876000-17878000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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