Variant report

Variant	rs17001653
Chromosome Location	chr4:77129272-77129273
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:77122262..77124788-chr4:77127198..77129570,2	K562	blood:
2	chr4:77117574..77120210-chr4:77127527..77130330,2	K562	blood:
3	chr4:77125920..77131688-chr4:77131770..77137672,14	K562	blood:
4	chr4:77122932..77125835-chr4:77128901..77130952,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000189157	Chromatin interaction
ENSG00000138760	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1583942	1.00[AMR][1000 genomes]
rs17001352	1.00[AMR][1000 genomes]
rs17001358	1.00[AMR][1000 genomes]
rs17001550	1.00[AMR][1000 genomes]
rs17001718	1.00[AMR][1000 genomes]
rs17001742	1.00[AMR][1000 genomes]
rs17001751	1.00[AMR][1000 genomes]
rs2083654	1.00[AMR][1000 genomes]
rs55680121	1.00[AMR][1000 genomes]
rs56235958	1.00[AMR][1000 genomes]
rs56693549	1.00[AMR][1000 genomes]
rs57573839	1.00[AMR][1000 genomes]
rs59732112	1.00[AMR][1000 genomes]
rs73825862	1.00[AMR][1000 genomes]
rs73825884	1.00[AMR][1000 genomes]
rs73826326	1.00[AMR][1000 genomes]
rs73826328	1.00[AMR][1000 genomes]
rs73826329	1.00[AMR][1000 genomes]
rs73826330	1.00[AMR][1000 genomes]
rs73826331	1.00[AMR][1000 genomes]
rs73826332	1.00[AMR][1000 genomes]
rs73826360	1.00[AMR][1000 genomes]
rs7670989	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1799666	chr4:77119942-77129568	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:77113200-77134000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr4:77113600-77134200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr4:77117000-77134000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr4:77117400-77132800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr4:77120000-77130200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr4:77120200-77129400	Enhancers	Brain Substantia Nigra	brain
7	chr4:77120200-77129600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr4:77120400-77129400	Weak transcription	Hela-S3	cervix
9	chr4:77120400-77129800	Weak transcription	Dnd41	blood
10	chr4:77121000-77129600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr4:77121200-77129400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr4:77121400-77129600	Weak transcription	Primary T cells fromperipheralblood	blood
13	chr4:77121400-77129800	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr4:77121400-77132800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr4:77121400-77133600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr4:77121400-77134000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr4:77121600-77129600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
18	chr4:77121600-77131000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
19	chr4:77122000-77129400	Weak transcription	Primary T helper cells PMA-I stimulated	--
20	chr4:77122200-77129600	Weak transcription	Primary B cells from peripheral blood	blood
21	chr4:77122200-77130800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
22	chr4:77122400-77129600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
23	chr4:77122400-77129600	Weak transcription	Esophagus	oesophagus
24	chr4:77122400-77133600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
25	chr4:77122600-77129600	Weak transcription	Fetal Thymus	thymus
26	chr4:77122600-77129800	Weak transcription	Thymus	Thymus
27	chr4:77123200-77129600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
28	chr4:77124600-77129600	Weak transcription	Fetal Muscle Trunk	muscle
29	chr4:77125200-77130000	Weak transcription	Spleen	Spleen
30	chr4:77126800-77129400	Enhancers	Adipose Nuclei	Adipose
31	chr4:77127000-77129400	Enhancers	Fetal Lung	lung
32	chr4:77127000-77129600	Enhancers	Breast Myoepithelial Primary Cells	Breast
33	chr4:77127000-77130800	Enhancers	Placenta	Placenta
34	chr4:77127000-77131600	Enhancers	Fetal Heart	heart
35	chr4:77127200-77129400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr4:77127400-77129400	Enhancers	Fetal Intestine Large	intestine
37	chr4:77127400-77129400	Enhancers	Fetal Kidney	kidney
38	chr4:77127400-77129800	Enhancers	Fetal Intestine Small	intestine
39	chr4:77127600-77129400	Weak transcription	Left Ventricle	heart
40	chr4:77127600-77129400	Enhancers	Rectal Mucosa Donor 29	rectum
41	chr4:77127600-77129600	Weak transcription	Pancreas	Pancrea
42	chr4:77127600-77130000	Weak transcription	Gastric	stomach
43	chr4:77127600-77130000	Weak transcription	Lung	lung
44	chr4:77127600-77130200	Enhancers	HMEC	breast
45	chr4:77127800-77129400	Weak transcription	Duodenum Mucosa	Duodenum
46	chr4:77127800-77130200	Enhancers	Brain Germinal Matrix	brain
47	chr4:77127800-77130800	Enhancers	Fetal Muscle Leg	muscle
48	chr4:77128000-77129400	Weak transcription	Primary T cells from cord blood	blood
49	chr4:77128000-77129400	Enhancers	Brain Inferior Temporal Lobe	brain
50	chr4:77128000-77129600	Weak transcription	GM12878-XiMat	blood

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