Variant report

Variant	rs17001358
Chromosome Location	chr4:77008217-77008218
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:77006287..77011420-chr4:77011515..77015802,5	K562	blood:
2	chr4:76931634..76933510-chr4:77007552..77010198,2	K562	blood:
3	chr4:76988548..76989486-chr4:77008040..77008812,3	K562	blood:
4	chr4:76917117..76917754-chr4:77008023..77008714,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000156219	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1583942	1.00[AMR][1000 genomes]
rs17001290	1.00[AMR][1000 genomes]
rs17001352	1.00[AMR][1000 genomes]
rs17001550	1.00[AMR][1000 genomes]
rs17001653	1.00[AMR][1000 genomes]
rs17001718	1.00[AMR][1000 genomes]
rs2083654	1.00[AMR][1000 genomes]
rs55680121	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56235958	1.00[AMR][1000 genomes]
rs56693549	1.00[AMR][1000 genomes]
rs57573839	1.00[AMR][1000 genomes]
rs58052237	1.00[AMR][1000 genomes]
rs59086574	1.00[AMR][1000 genomes]
rs59732112	1.00[AMR][1000 genomes]
rs73825590	1.00[AMR][1000 genomes]
rs73825592	1.00[AMR][1000 genomes]
rs73825597	1.00[AMR][1000 genomes]
rs73825862	1.00[AMR][1000 genomes]
rs73825884	1.00[AMR][1000 genomes]
rs73826326	1.00[AMR][1000 genomes]
rs73826328	1.00[AMR][1000 genomes]
rs73826329	1.00[AMR][1000 genomes]
rs73826330	1.00[AMR][1000 genomes]
rs73826331	1.00[AMR][1000 genomes]
rs73826332	1.00[AMR][1000 genomes]
rs73826360	1.00[AMR][1000 genomes]
rs73829003	1.00[AMR][1000 genomes]
rs73829006	1.00[AMR][1000 genomes]
rs73829007	1.00[AMR][1000 genomes]
rs7670989	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529613	chr4:76654941-77081576	Flanking Active TSS Weak transcription Genic enhancers Strong transcription Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv1009047	chr4:76989180-77077885	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:77007200-77008400	Enhancers	Fetal Brain Male	brain
2	chr4:77007800-77008400	Enhancers	HMEC	breast
3	chr4:77007800-77008600	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
4	chr4:77008000-77008400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
5	chr4:77008000-77008400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr4:77008000-77008400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr4:77008000-77008400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr4:77008000-77008400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr4:77008000-77008400	Enhancers	Adipose Nuclei	Adipose
10	chr4:77008000-77008400	Flanking Active TSS	Brain Anterior Caudate	brain
11	chr4:77008000-77008400	Flanking Active TSS	Brain Substantia Nigra	brain
12	chr4:77008000-77008400	Enhancers	Esophagus	oesophagus
13	chr4:77008000-77008400	Flanking Active TSS	Fetal Heart	heart
14	chr4:77008000-77008400	Enhancers	Left Ventricle	heart
15	chr4:77008000-77008400	Enhancers	Lung	lung
16	chr4:77008000-77008400	Enhancers	Pancreas	Pancrea
17	chr4:77008000-77008400	Flanking Active TSS	Right Atrium	heart
18	chr4:77008000-77008400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
19	chr4:77008000-77008400	Flanking Active TSS	K562	blood
20	chr4:77008000-77008600	Flanking Active TSS	Brain Angular Gyrus	brain
21	chr4:77008000-77008600	Flanking Active TSS	Brain Hippocampus Middle	brain
22	chr4:77008000-77008600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
23	chr4:77008000-77008600	Enhancers	Fetal Muscle Leg	muscle
24	chr4:77008000-77008600	Active TSS	Psoas Muscle	Psoas
25	chr4:77008000-77008600	Active TSS	Stomach Smooth Muscle	stomach
26	chr4:77008000-77008800	Enhancers	ES-I3 Cell Line	embryonic stem cell
27	chr4:77008000-77008800	Enhancers	HUES48 Cell Line	embryonic stem cell
28	chr4:77008000-77008800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr4:77008000-77008800	Enhancers	NHEK	skin
30	chr4:77008000-77009000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr4:77008000-77009200	Enhancers	HepG2	liver
32	chr4:77008000-77009400	Enhancers	Breast Myoepithelial Primary Cells	Breast
33	chr4:77008000-77009400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr4:77008200-77008400	ZNF genes & repeats	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
35	chr4:77008200-77008400	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr4:77008200-77008400	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
37	chr4:77008200-77008400	Enhancers	iPS-15b Cell Line	embryonic stem cell
38	chr4:77008200-77008400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr4:77008200-77008400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr4:77008200-77008400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
41	chr4:77008200-77008400	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr4:77008200-77008400	Enhancers	Fetal Thymus	thymus
43	chr4:77008200-77008400	Enhancers	Right Ventricle	heart
44	chr4:77008200-77008400	Flanking Active TSS	HSMM	muscle
45	chr4:77008200-77008400	Flanking Active TSS	HSMMtube	muscle
46	chr4:77008200-77008600	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr4:77008200-77008600	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
48	chr4:77008200-77008600	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
49	chr4:77008200-77008600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr4:77008200-77008600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links