Variant report

Variant	rs73829006
Chromosome Location	chr4:76944011-76944012
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs17001290	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17001352	1.00[AMR][1000 genomes]
rs17001358	1.00[AMR][1000 genomes]
rs17001550	1.00[AMR][1000 genomes]
rs55680121	1.00[AMR][1000 genomes]
rs56235958	1.00[AMR][1000 genomes]
rs56693549	1.00[AMR][1000 genomes]
rs57573839	1.00[AMR][1000 genomes]
rs58052237	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59086574	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59732112	1.00[AMR][1000 genomes]
rs73825590	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73825592	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73825597	1.00[AMR][1000 genomes]
rs73825862	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73825884	1.00[AMR][1000 genomes]
rs73826326	1.00[AMR][1000 genomes]
rs73826328	1.00[AMR][1000 genomes]
rs73826329	1.00[AMR][1000 genomes]
rs73826330	1.00[AMR][1000 genomes]
rs73826331	1.00[AMR][1000 genomes]
rs73826332	1.00[AMR][1000 genomes]
rs73826360	1.00[AMR][1000 genomes]
rs73829003	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73829007	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3353539	chr4:76530136-76993859	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv529613	chr4:76654941-77081576	Flanking Active TSS Weak transcription Genic enhancers Strong transcription Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv1004627	chr4:76793910-76999584	Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:76934400-76944200	Weak transcription	Primary B cells from peripheral blood	blood
2	chr4:76939000-76944200	Weak transcription	Fetal Intestine Small	intestine
3	chr4:76941800-76944400	Weak transcription	Primary monocytes fromperipheralblood	blood
4	chr4:76943400-76944800	Enhancers	Fetal Lung	lung
5	chr4:76943600-76944600	Active TSS	GM12878-XiMat	blood
6	chr4:76944000-76944600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr4:76944000-76944600	Enhancers	Monocytes-CD14+_RO01746	blood
8	chr4:76944000-76944800	Enhancers	Duodenum Mucosa	Duodenum

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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