Variant report

Variant	rs73825597
Chromosome Location	chr4:76910410-76910411
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:76861625..76863720-chr4:76909476..76912300,3	MCF-7	breast:
2	chr4:76889181..76890781-chr4:76908740..76910995,2	K562	blood:
3	chr4:76910224..76911940-chr4:76940902..76942598,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000138744	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs17001290	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17001352	1.00[AMR][1000 genomes]
rs17001358	1.00[AMR][1000 genomes]
rs17001550	1.00[AMR][1000 genomes]
rs55680121	1.00[AMR][1000 genomes]
rs56235958	1.00[AMR][1000 genomes]
rs56693549	1.00[AMR][1000 genomes]
rs57573839	1.00[AMR][1000 genomes]
rs58052237	1.00[AMR][1000 genomes]
rs59086574	1.00[AMR][1000 genomes]
rs59732112	1.00[AMR][1000 genomes]
rs73825590	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73825592	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73825862	1.00[AMR][1000 genomes]
rs73825884	1.00[AMR][1000 genomes]
rs73826326	1.00[AMR][1000 genomes]
rs73826328	1.00[AMR][1000 genomes]
rs73826329	1.00[AMR][1000 genomes]
rs73826330	1.00[AMR][1000 genomes]
rs73826331	1.00[AMR][1000 genomes]
rs73826332	1.00[AMR][1000 genomes]
rs73826360	1.00[AMR][1000 genomes]
rs73829003	1.00[AMR][1000 genomes]
rs73829006	1.00[AMR][1000 genomes]
rs73829007	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3353539	chr4:76530136-76993859	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv529613	chr4:76654941-77081576	Flanking Active TSS Weak transcription Genic enhancers Strong transcription Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv1004627	chr4:76793910-76999584	Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:76887200-76911000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr4:76900200-76911000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr4:76902000-76911000	Weak transcription	Aorta	Aorta
4	chr4:76902200-76910800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr4:76902200-76911000	Weak transcription	Gastric	stomach
6	chr4:76902200-76911000	Weak transcription	Pancreas	Pancrea
7	chr4:76902200-76911200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr4:76902200-76911200	Weak transcription	Esophagus	oesophagus
9	chr4:76902400-76910600	Weak transcription	Fetal Kidney	kidney
10	chr4:76902600-76910800	Weak transcription	Fetal Muscle Trunk	muscle
11	chr4:76902600-76911000	Weak transcription	Primary neutrophils fromperipheralblood	blood
12	chr4:76902800-76910600	Weak transcription	Fetal Brain Male	brain
13	chr4:76903800-76910800	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr4:76903800-76910800	Weak transcription	Lung	lung
15	chr4:76903800-76911000	Weak transcription	Placenta	Placenta
16	chr4:76905800-76910800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
17	chr4:76906200-76910600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
18	chr4:76906400-76910800	Enhancers	Primary T helper cells fromperipheralblood	blood
19	chr4:76906600-76910800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr4:76906600-76910800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
21	chr4:76907000-76910600	Weak transcription	HSMMtube	muscle
22	chr4:76907200-76910600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
23	chr4:76907200-76910600	Weak transcription	HSMM	muscle
24	chr4:76907600-76910600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
25	chr4:76907600-76910800	Enhancers	Primary T killer memory cells from peripheral blood	blood
26	chr4:76908200-76911000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr4:76908200-76911200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr4:76909000-76910600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
29	chr4:76909000-76910800	Enhancers	Skeletal Muscle Female	skeletal muscle
30	chr4:76909000-76911000	Enhancers	Primary B cells from peripheral blood	blood
31	chr4:76909200-76910600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr4:76909200-76910600	Enhancers	Primary T cells from cord blood	blood
33	chr4:76909200-76910600	Active TSS	GM12878-XiMat	blood
34	chr4:76909200-76910800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
35	chr4:76909200-76910800	Enhancers	Adipose Nuclei	Adipose
36	chr4:76909200-76910800	Enhancers	Brain Inferior Temporal Lobe	brain
37	chr4:76909200-76910800	Enhancers	Sigmoid Colon	Sigmoid Colon
38	chr4:76909400-76910600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr4:76909800-76910600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
40	chr4:76909800-76910600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr4:76909800-76910600	Enhancers	Hela-S3	cervix
42	chr4:76909800-76910800	Enhancers	Cortex derived primary cultured neurospheres	brain
43	chr4:76910000-76910600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr4:76910000-76910600	Enhancers	Brain Angular Gyrus	brain
45	chr4:76910000-76910600	Enhancers	Duodenum Mucosa	Duodenum
46	chr4:76910000-76910600	Enhancers	Fetal Brain Female	brain
47	chr4:76910000-76910600	Enhancers	Fetal Intestine Large	intestine
48	chr4:76910000-76910800	Enhancers	Primary B cells from cord blood	blood
49	chr4:76910000-76910800	Enhancers	Brain Anterior Caudate	brain
50	chr4:76910000-76910800	Enhancers	Brain Hippocampus Middle	brain

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