Variant report

Variant	rs17003157
Chromosome Location	chr4:79281934-79281935
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:79277519..79279860-chr4:79280043..79282916,2	K562	blood:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs17003128	1.00[AMR][1000 genomes]
rs17003130	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17003170	1.00[AMR][1000 genomes]
rs17003190	1.00[AMR][1000 genomes]
rs17003217	1.00[AMR][1000 genomes]
rs17003229	1.00[AMR][1000 genomes]
rs17003249	1.00[AMR][1000 genomes]
rs17003255	1.00[AMR][1000 genomes]
rs17003269	1.00[AMR][1000 genomes]
rs17003281	1.00[AMR][1000 genomes]
rs1995061	1.00[AMR][1000 genomes]
rs34358235	1.00[AMR][1000 genomes]
rs36067699	1.00[AMR][1000 genomes]
rs6533643	1.00[AMR][1000 genomes]
rs6830611	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6843017	1.00[AMR][1000 genomes]
rs6849354	1.00[AMR][1000 genomes]
rs7678493	1.00[AMR][1000 genomes]
rs7690611	1.00[AMR][1000 genomes]
rs7691528	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534024	chr4:78785189-79437403	ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv1009633	chr4:78887573-79652236	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
3	nsv1010782	chr4:79057839-79387207	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	nsv829978	chr4:79144453-79291868	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv4399	chr4:79251832-79284571	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:79258800-79291000	Weak transcription	Fetal Lung	lung
2	chr4:79261400-79287800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr4:79263000-79282200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr4:79263400-79283400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr4:79266400-79284400	Weak transcription	HepG2	liver
6	chr4:79268600-79283200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr4:79268800-79283400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr4:79268800-79287400	Weak transcription	Pancreas	Pancrea
9	chr4:79275400-79310600	Weak transcription	Aorta	Aorta
10	chr4:79276000-79289800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr4:79277600-79282000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr4:79280600-79284000	Enhancers	H9 Cell Line	embryonic stem cell
13	chr4:79280600-79284400	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr4:79280800-79282400	Enhancers	Fetal Intestine Large	intestine
15	chr4:79280800-79283400	Enhancers	HUES64 Cell Line	embryonic stem cell
16	chr4:79281000-79283600	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr4:79281000-79284000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
18	chr4:79281000-79284400	Enhancers	HUES6 Cell Line	embryonic stem cell
19	chr4:79281000-79284600	Enhancers	iPS-15b Cell Line	embryonic stem cell
20	chr4:79281200-79284000	Enhancers	H1 Cell Line	embryonic stem cell
21	chr4:79281400-79282200	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
22	chr4:79281600-79283800	Weak transcription	Fetal Intestine Small	intestine
23	chr4:79281600-79285200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
24	chr4:79281800-79282200	Enhancers	Brain Germinal Matrix	brain
25	chr4:79281800-79284600	Enhancers	HUES48 Cell Line	embryonic stem cell

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