Variant report

Variant	rs34358235
Chromosome Location	chr4:79409936-79409937
allele	-/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs17003128	1.00[AMR][1000 genomes]
rs17003130	1.00[AMR][1000 genomes]
rs17003157	1.00[AMR][1000 genomes]
rs17003170	1.00[AMR][1000 genomes]
rs17003190	1.00[AMR][1000 genomes]
rs17003217	1.00[AMR][1000 genomes]
rs17003229	1.00[AMR][1000 genomes]
rs17003249	1.00[AMR][1000 genomes]
rs17003255	1.00[AMR][1000 genomes]
rs17003269	1.00[AMR][1000 genomes]
rs17003281	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17003344	1.00[AMR][1000 genomes]
rs1995061	1.00[AMR][1000 genomes]
rs36067699	1.00[AMR][1000 genomes]
rs6533643	1.00[AMR][1000 genomes]
rs6830611	1.00[AMR][1000 genomes]
rs6843017	1.00[AMR][1000 genomes]
rs6849354	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7670643	1.00[AMR][1000 genomes]
rs7678493	1.00[AMR][1000 genomes]
rs7690611	1.00[AMR][1000 genomes]
rs7691528	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534024	chr4:78785189-79437403	ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv1009633	chr4:78887573-79652236	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:79343200-79431800	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr4:79363400-79455200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr4:79363800-79464200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr4:79376200-79411600	Weak transcription	Fetal Stomach	stomach
5	chr4:79378600-79455800	Weak transcription	Right Ventricle	heart
6	chr4:79385000-79467400	Weak transcription	Fetal Brain Male	brain
7	chr4:79393800-79467200	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr4:79396800-79410000	Weak transcription	Pancreas	Pancrea
9	chr4:79399200-79410000	Weak transcription	Esophagus	oesophagus
10	chr4:79401000-79467200	Weak transcription	Psoas Muscle	Psoas
11	chr4:79402000-79427600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr4:79403000-79420200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr4:79403200-79428000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr4:79403200-79449800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr4:79403800-79411000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr4:79403800-79428000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr4:79404000-79427200	Weak transcription	Fetal Intestine Small	intestine
18	chr4:79404200-79450200	Weak transcription	HMEC	breast
19	chr4:79404400-79431800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr4:79405000-79410000	Weak transcription	HUES64 Cell Line	embryonic stem cell
21	chr4:79406200-79416400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr4:79407200-79410000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr4:79407400-79415600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr4:79407400-79417400	Weak transcription	Fetal Intestine Large	intestine
25	chr4:79408000-79411200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
26	chr4:79408200-79411200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr4:79408600-79435000	Weak transcription	Fetal Heart	heart
28	chr4:79409400-79410800	Strong transcription	Fetal Lung	lung
29	chr4:79409600-79410200	Strong transcription	HSMMtube	muscle
30	chr4:79409600-79411200	Strong transcription	H1 Cell Line	embryonic stem cell
31	chr4:79409600-79411200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
32	chr4:79409600-79411400	Strong transcription	HUES48 Cell Line	embryonic stem cell
33	chr4:79409800-79410200	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr4:79409800-79410200	Strong transcription	H9 Cell Line	embryonic stem cell
35	chr4:79409800-79410200	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
36	chr4:79409800-79410200	ZNF genes & repeats	Aorta	Aorta
37	chr4:79409800-79410200	Strong transcription	HepG2	liver
38	chr4:79409800-79410400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
39	chr4:79409800-79411000	Strong transcription	Fetal Kidney	kidney
40	chr4:79409800-79411600	Strong transcription	HUES6 Cell Line	embryonic stem cell

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