Variant report

Variant	rs6849354
Chromosome Location	chr4:79405202-79405203
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs17003128	1.00[AMR][1000 genomes]
rs17003130	1.00[AMR][1000 genomes]
rs17003157	1.00[AMR][1000 genomes]
rs17003170	1.00[AMR][1000 genomes]
rs17003190	1.00[AMR][1000 genomes]
rs17003217	1.00[AMR][1000 genomes]
rs17003229	1.00[AMR][1000 genomes]
rs17003249	1.00[AMR][1000 genomes]
rs17003255	1.00[AMR][1000 genomes]
rs17003269	1.00[AMR][1000 genomes]
rs17003281	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17003344	1.00[AMR][1000 genomes]
rs1995061	1.00[AMR][1000 genomes]
rs34358235	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs36067699	1.00[AMR][1000 genomes]
rs6533643	1.00[AMR][1000 genomes]
rs6830611	1.00[AMR][1000 genomes]
rs6843017	1.00[AMR][1000 genomes]
rs7670643	1.00[AMR][1000 genomes]
rs7678493	1.00[AMR][1000 genomes]
rs7690611	1.00[AMR][1000 genomes]
rs7691528	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534024	chr4:78785189-79437403	ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv1009633	chr4:78887573-79652236	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:79343200-79431800	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr4:79363200-79409800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr4:79363400-79455200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr4:79363800-79464200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr4:79365600-79406400	Strong transcription	HUES48 Cell Line	embryonic stem cell
6	chr4:79366200-79408200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
7	chr4:79376200-79411600	Weak transcription	Fetal Stomach	stomach
8	chr4:79378600-79455800	Weak transcription	Right Ventricle	heart
9	chr4:79384600-79405400	Strong transcription	H1 Cell Line	embryonic stem cell
10	chr4:79384800-79405600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
11	chr4:79385000-79467400	Weak transcription	Fetal Brain Male	brain
12	chr4:79391000-79405600	Weak transcription	Fetal Heart	heart
13	chr4:79391600-79406800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr4:79393800-79467200	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr4:79396200-79406000	Strong transcription	HepG2	liver
16	chr4:79396800-79410000	Weak transcription	Pancreas	Pancrea
17	chr4:79398000-79409400	Weak transcription	Fetal Lung	lung
18	chr4:79398400-79405400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr4:79398400-79405800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr4:79399200-79409800	Weak transcription	Aorta	Aorta
21	chr4:79399200-79410000	Weak transcription	Esophagus	oesophagus
22	chr4:79399400-79409800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
23	chr4:79401000-79467200	Weak transcription	Psoas Muscle	Psoas
24	chr4:79402000-79427600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
25	chr4:79402400-79409600	Weak transcription	HSMMtube	muscle
26	chr4:79403000-79407600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr4:79403000-79420200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr4:79403200-79428000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr4:79403200-79449800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr4:79403600-79409800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr4:79403800-79406200	Weak transcription	Fetal Intestine Large	intestine
32	chr4:79403800-79407600	Weak transcription	Left Ventricle	heart
33	chr4:79403800-79409800	Weak transcription	Fetal Kidney	kidney
34	chr4:79403800-79411000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr4:79403800-79428000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
36	chr4:79404000-79405400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr4:79404000-79405800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr4:79404000-79409800	Weak transcription	H9 Cell Line	embryonic stem cell
39	chr4:79404000-79427200	Weak transcription	Fetal Intestine Small	intestine
40	chr4:79404200-79450200	Weak transcription	HMEC	breast
41	chr4:79404400-79431800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr4:79404600-79409800	Weak transcription	HUES6 Cell Line	embryonic stem cell
43	chr4:79405000-79406200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr4:79405000-79407400	Enhancers	K562	blood
45	chr4:79405000-79410000	Weak transcription	HUES64 Cell Line	embryonic stem cell
46	chr4:79405200-79406000	Enhancers	NHDF-Ad	bronchial

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links