Variant report

Variant	rs17005171
Chromosome Location	chr4:82495894-82495895
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs57767495	1.00[AMR][1000 genomes]
rs58213670	1.00[AMR][1000 genomes]
rs58912953	1.00[AMR][1000 genomes]
rs6845421	1.00[AMR][1000 genomes]
rs72883087	1.00[AMR][1000 genomes]
rs72883090	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999729	chr4:81802554-82627820	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv537156	chr4:81802554-82627820	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv829986	chr4:82345163-82509860	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1005254	chr4:82416237-82521768	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv526616	chr4:82434740-83218230	Flanking Active TSS Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:82487600-82496600	Weak transcription	Aorta	Aorta
2	chr4:82487600-82500200	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr4:82492600-82499600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr4:82493000-82500200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr4:82494000-82496200	Weak transcription	Fetal Lung	lung
6	chr4:82494400-82499000	Weak transcription	Small Intestine	intestine
7	chr4:82494800-82496000	Weak transcription	Liver	Liver
8	chr4:82495600-82496400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr4:82495600-82496800	Enhancers	H1 Cell Line	embryonic stem cell
10	chr4:82495800-82496600	Weak transcription	Fetal Stomach	stomach
11	chr4:82495800-82496800	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr4:82495800-82496800	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr4:82495800-82497000	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr4:82495800-82497400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr4:82495800-82498600	Weak transcription	Stomach Mucosa	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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