Variant report

Variant	rs72883090
Chromosome Location	chr4:82407074-82407075
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs17005137	0.86[AFR][1000 genomes]
rs17005171	1.00[AMR][1000 genomes]
rs57767495	1.00[AMR][1000 genomes]
rs58213670	1.00[AMR][1000 genomes]
rs58912953	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6844571	0.86[AFR][1000 genomes]
rs6845421	1.00[AMR][1000 genomes]
rs6847878	0.86[AFR][1000 genomes]
rs6849758	0.86[AFR][1000 genomes]
rs72883087	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999729	chr4:81802554-82627820	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv537156	chr4:81802554-82627820	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv829986	chr4:82345163-82509860	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:82406200-82408200	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr4:82406400-82407400	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr4:82406400-82407600	Enhancers	Fetal Heart	heart
4	chr4:82406400-82408200	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr4:82406400-82408200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr4:82406400-82408200	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr4:82406400-82408200	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr4:82406600-82407200	Enhancers	H1 Cell Line	embryonic stem cell
9	chr4:82406600-82407400	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr4:82406800-82407800	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr4:82406800-82408000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr4:82406800-82408000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr4:82406800-82408400	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr4:82407000-82407600	Weak transcription	Placenta	Placenta
15	chr4:82407000-82413600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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