Variant report

Variant	rs6845421
Chromosome Location	chr4:82415891-82415892
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs17005171	1.00[AMR][1000 genomes]
rs57767495	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58213670	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58912953	1.00[AMR][1000 genomes]
rs6831308	0.95[AFR][1000 genomes]
rs72883087	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72883090	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999729	chr4:81802554-82627820	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv537156	chr4:81802554-82627820	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv829986	chr4:82345163-82509860	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:82411800-82417000	Enhancers	Primary B cells from peripheral blood	blood
2	chr4:82413800-82425200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr4:82414200-82419200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr4:82414800-82416800	Enhancers	Fetal Intestine Large	intestine
5	chr4:82415400-82417200	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr4:82415400-82421000	Weak transcription	Brain Anterior Caudate	brain
7	chr4:82415600-82416000	Weak transcription	Fetal Intestine Small	intestine
8	chr4:82415600-82416000	Enhancers	Fetal Thymus	thymus
9	chr4:82415600-82417000	Enhancers	Primary hematopoietic stem cells	blood
10	chr4:82415600-82417000	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr4:82415600-82417000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
12	chr4:82415800-82416000	Weak transcription	Duodenum Mucosa	Duodenum
13	chr4:82415800-82416200	Enhancers	Primary T cells fromperipheralblood	blood
14	chr4:82415800-82416200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
15	chr4:82415800-82416400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
16	chr4:82415800-82416400	Enhancers	Adipose Nuclei	Adipose
17	chr4:82415800-82416600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
18	chr4:82415800-82416600	Weak transcription	Primary T helper cells fromperipheralblood	blood
19	chr4:82415800-82416600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
20	chr4:82415800-82416800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr4:82415800-82417000	Enhancers	Primary T helper cells PMA-I stimulated	--
22	chr4:82415800-82417200	Enhancers	Primary B cells from cord blood	blood
23	chr4:82415800-82417200	Enhancers	Primary T cells from cord blood	blood
24	chr4:82415800-82417400	Enhancers	Monocytes-CD14+_RO01746	blood
25	chr4:82415800-82420400	Weak transcription	Fetal Lung	lung
26	chr4:82415800-82421000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
27	chr4:82415800-82423800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr4:82415800-82425800	Weak transcription	Right Atrium	heart
29	chr4:82415800-82426000	Weak transcription	Rectal Mucosa Donor 31	rectum

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