Variant report

Variant	rs17005899
Chromosome Location	chr3:69500158-69500159
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs13323667	1.00[EUR][1000 genomes]
rs58587482	1.00[EUR][1000 genomes]
rs60962399	1.00[EUR][1000 genomes]
rs61048195	1.00[EUR][1000 genomes]
rs7355895	1.00[EUR][1000 genomes]
rs7648079	1.00[EUR][1000 genomes]
rs9310162	1.00[EUR][1000 genomes]
rs9810578	1.00[EUR][1000 genomes]
rs9836039	1.00[EUR][1000 genomes]
rs9837414	1.00[EUR][1000 genomes]
rs9848468	1.00[EUR][1000 genomes]
rs9862455	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007730	chr3:69355932-69730587	Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv2760780	chr3:69413876-69513947	Enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv3426797	chr3:69433086-69777229	Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:69491200-69502200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr3:69493200-69500400	Weak transcription	Fetal Heart	heart
3	chr3:69493400-69500600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr3:69493400-69503400	Weak transcription	Pancreas	Pancrea
5	chr3:69494600-69500600	Weak transcription	Right Ventricle	heart
6	chr3:69494800-69500200	Weak transcription	Fetal Muscle Leg	muscle
7	chr3:69494800-69500400	Weak transcription	Right Atrium	heart
8	chr3:69494800-69507600	Weak transcription	HMEC	breast
9	chr3:69495000-69500200	Weak transcription	Brain Hippocampus Middle	brain
10	chr3:69495000-69500200	Weak transcription	Fetal Brain Male	brain
11	chr3:69495000-69500200	Weak transcription	Fetal Stomach	stomach
12	chr3:69495000-69500400	Weak transcription	Brain Substantia Nigra	brain
13	chr3:69495000-69500600	Weak transcription	Ovary	ovary
14	chr3:69495000-69509200	Weak transcription	Brain Anterior Caudate	brain
15	chr3:69495200-69500200	Weak transcription	Colon Smooth Muscle	Colon
16	chr3:69497600-69500400	Weak transcription	Fetal Brain Female	brain
17	chr3:69499000-69506000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr3:69499200-69503400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr3:69499200-69504600	Weak transcription	NHEK	skin
20	chr3:69499600-69505600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr3:69500000-69501800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr3:69500000-69502200	Enhancers	Fetal Lung	lung

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