Variant report

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs13323667	1.00[EUR][1000 genomes]
rs17005899	1.00[EUR][1000 genomes]
rs58587482	1.00[EUR][1000 genomes]
rs60962399	1.00[EUR][1000 genomes]
rs61048195	1.00[EUR][1000 genomes]
rs7648079	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9310162	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9810578	1.00[EUR][1000 genomes]
rs9836039	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9837414	1.00[EUR][1000 genomes]
rs9848468	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9862455	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007730	chr3:69355932-69730587	Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv3426797	chr3:69433086-69777229	Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:69513400-69549200	Weak transcription	HMEC	breast
2	chr3:69522000-69543200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr3:69524200-69543600	Weak transcription	NHEK	skin
4	chr3:69530200-69534800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr3:69533200-69539600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr3:69533400-69535200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr3:69533400-69536600	Enhancers	Fetal Heart	heart
8	chr3:69533600-69534600	Enhancers	Fetal Muscle Leg	muscle
9	chr3:69533600-69534800	Enhancers	Brain Cingulate Gyrus	brain
10	chr3:69533600-69535000	Enhancers	Left Ventricle	heart
11	chr3:69533800-69534200	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr3:69533800-69534200	Weak transcription	Brain Hippocampus Middle	brain
13	chr3:69533800-69534600	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
14	chr3:69533800-69535000	Enhancers	Spleen	Spleen
15	chr3:69533800-69535600	Enhancers	Brain Substantia Nigra	brain
16	chr3:69533800-69535800	Enhancers	Ovary	ovary
17	chr3:69533800-69535800	Enhancers	Right Ventricle	heart
18	chr3:69533800-69536400	Enhancers	Fetal Lung	lung
19	chr3:69534000-69534400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr3:69534000-69534800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
21	chr3:69534000-69535400	Enhancers	Brain Inferior Temporal Lobe	brain

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