Variant report

Variant	rs9836039
Chromosome Location	chr3:69522789-69522790
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs13323667	1.00[EUR][1000 genomes]
rs17005899	1.00[EUR][1000 genomes]
rs58587482	1.00[EUR][1000 genomes]
rs60962399	1.00[EUR][1000 genomes]
rs61048195	1.00[EUR][1000 genomes]
rs7355895	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7648079	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9310162	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9810578	1.00[EUR][1000 genomes]
rs9837414	1.00[EUR][1000 genomes]
rs9848468	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9862455	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007730	chr3:69355932-69730587	Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv3426797	chr3:69433086-69777229	Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:69513400-69549200	Weak transcription	HMEC	breast
2	chr3:69514200-69523400	Weak transcription	NHEK	skin
3	chr3:69521800-69523800	Weak transcription	Fetal Lung	lung
4	chr3:69522000-69543200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr3:69522400-69533400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr3:69522400-69533800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr3:69522600-69530200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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